Here's the problem: I found out about the Parallel Universe Mod and wanted to use it, so I copy/pasted my privateer remake files into a new directory and unzipped the .rar to the new directory.
But I didn't want to start a new game (this is my first time through privateer), so I loaded my old game from PR. The problem is, now I don't seem to get any random encounters with enemies. Friendly ships show up but not enemies. I've even done two dangerous run cargo missions, but still no enemies. FYI, the factions I am currently enemies with are pirates and retros.
If I do a bounty mission, enemies seem to show up, but otherwise nothing. Has anyone encountered this bug before, and is there any way to fix it other than starting a new game or going back to playing the vanilla privateer remake?
editAlso: Am I right in thinking that doing missions for one guild affects your pay for the other? I was getting missions for 40-60G+ at the Merchants' guild, and 10-15G at the mercenaries' guild. Now after adding a fully-loaded Centurion to my fleet and doing a couple of mercenary missions, the merchant's guild only seems to be paying me 20-30G for their missions, and the mercenarys' guild doesn't seem to be paying much better easer

