The engines turn on and off automatically, anyways; like, whenever the ship accelerates they come on, so you'd get to see the glow.
I can't answer your question on armor on the back; it's your model, your call, really, as wherever canon is inconsistent, it becomes a value judgement and a personal taste thing. I'm usually for departures from canon when canon is in the wrong, or when we can do something a lot more realistic, given current computer technology; but some people consider canon a sacred thing. I've seen a lot of heated debates, like whether Draymans are too weak and should be given some turrets... Horror of horrors, scream the canon heads. Endless debates.
On the other hand, and in this particular case, if all that's visible from the back is the engines, there's not much room for armor, is there?; I mean, you can't cover the engines with armor.
Maybe there's a reason why one tries to avoid a bogie on one's 6...

Maybe the armor *figure* for the back is in error...